Scaffold Ga0310130_0001996

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001996
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10096
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (23.81%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F011218	Metagenome / Metatranscriptome	293	N
F015723	Metagenome / Metatranscriptome	252	Y
F033779	Metagenome / Metatranscriptome	176	Y
F039112	Metagenome	164	Y
F093771	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001996_2202_2639	F015723	N/A	MAKIVSITPKGQWQDLFKLEIRFDNGDFGTAFAKSPTPSYAVGDEVDYTKNEKGTIKINKPFGGGFGGGSTPSYTPSYGGAKSDDRSASIIRQVALKAAVEYACAAGHDVNTILANAATFNEWMNGNQSTATHQEHFATRNESPF
Ga0310130_0001996_2654_2794	F039112	N/A	MTLNLSQDTYSQALVAQQAQIQALQNKVQELEAKIQVLEQQSHLFI
Ga0310130_0001996_2828_3172	F009600	N/A	VVGKVPSLNAFYASKHWTVRAKAKDKHCAEVLQQLQEYDCVPIHHVYITCKVNYRYDIDNSIMAVKFALDAFRKWGGVKDDSRAYVRKLKLEHDPEIHPDTAEITFQGLVVEQS
Ga0310130_0001996_3187_3387	F011218	N/A	MQYYTNPAKRRKIDFLLAECASLFANCDSTYQARQEAKYKEQSILAEIAKIDYHFAIQCGYLLQDN
Ga0310130_0001996_4010_4429	F033779	N/A	MNGSMNLKKRKSLFVALTILIATLAGVSGCRTAQPILQSVIVKDTVIVTETKYLIDTLEVMKDTVIYQDKVRVQLQYIDRKVVVEAACLPDTIRITQTKIVAKQEPKVKKWTLESYLGALAFILTFAYLIKRWIDKLTE
Ga0310130_0001996_5888_6064	F093771	N/A	MTKESADSVITSWSLTGAGLLVGYVHQVLGLLVLVASLSYTLWKWHRDWTKHKNESKL
Ga0310130_0001996_644_874	F010908	GAGG	MKQIFSPFQQLECFRVDGVDYICLDYQIIQDSEDKLVDWCSWFKFKRLSDHKHFLMPITKIIETKKEGRATLCKCK
Ga0310130_0001996_871_1182	F009202	N/A	MYPSEELHDLYIREKQLMLSGTAIWLAHQAADKSKGREVQDEMLDHVMNCHHADQLLQQFIDYRLFANRKLNEVMLANAQLRVNNEEMIMEIERLQRIIEDNL