Scaffold Ga0310130_0001709

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001709
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11351
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (78.79%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F002060	Metagenome / Metatranscriptome	597	Y
F012013	Metagenome / Metatranscriptome	284	Y
F013891	Metagenome / Metatranscriptome	267	Y
F047645	Metagenome / Metatranscriptome	149	Y
F074876	Metagenome / Metatranscriptome	119	Y
F084138	Metagenome / Metatranscriptome	112	Y
F105019	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001709_1012_1236	F013891	N/A	MKKRVREIKKPMLLLMDVAMYPDFLALRLYEDNFLQFDGSKKEEVIDYVSKVKKLIESYGVRCELEGIPSGRVL
Ga0310130_0001709_10732_11130	F012013	AGGA	MDRVHIESLDVLKAQGELIARRDNVFVELNEIIDKLEKIPVFPSLMWVWAFDIMKEIFDNYQIKDLAVNDYVDEGVPEGITLKQIFDKFWADVDGFGLSMDSGGDIIEETIRDWMRDNNFLVSLEEDGWLDE
Ga0310130_0001709_1220_1420	F074876	GGAGG	VEEYYEIINIVYVYPEKVYGTVEQLGAFASMVKYQKDGTDHEVLLENDEFAIVDEIVFHHVEENNE
Ga0310130_0001709_1679_1987	F002060	AGG	MDYTSIVLAISAAILSGMGTAIIAGVKDAKKEKIRQQERAQDLLKLEIKDLKISLYKLERDLTEWKDKYYNAIQDLIVVKAELENALTQLNLIELNELDSEI
Ga0310130_0001709_4061_4279	F084138	AGGA	MANNVTVLEGIIEDVAVALYQKWYNAIPSGRVKEDSEEALVLKKNAQEITLFVIQMFMDKFNEEAERLKNED
Ga0310130_0001709_6967_7104	F105019	AGAAG	MGKHHEKIAASLEIRRRNHKGPGGKVPGSMNKKKTGYNRVKARKS
Ga0310130_0001709_7542_7697	F001280	GGAGG	MEKKPTADTFGSQTGEVSIPGGVLNVSRDGESGLTLNMTASQQERLRFINE
Ga0310130_0001709_8055_8240	F047645	AGGCGG	VQCKHVYEYVYSKICPYCGSDTHEPDHEKQHKLFVEYYKSEAPKAYICPVDGGTIRGWWS