NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0000975

Scaffold Ga0310130_0000975


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0000975 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17152
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (5.56%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002778Metagenome / Metatranscriptome530N
F004839Metagenome / Metatranscriptome421N
F010541Metagenome / Metatranscriptome302Y
F025505Metagenome / Metatranscriptome201N
F033801Metagenome176Y
F051874Metagenome / Metatranscriptome143Y
F087195Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0000975_10227_10373F033801N/AMVLMYWEIKWKSGKVITNAPTVEEAIKKFKEMRIEVPDKEITISKFGK
Ga0310130_0000975_11041_11301F010541N/AMEKQIFTVMYFGNAKRYQDLCEEVAAYSKRHAVEKIYAKFRNEDYFPDDFFLWGGIVKDCDGNVIAYSGSETIEYDGGYFYAEPVI
Ga0310130_0000975_12413_12949F004839N/AMEKNFTNTQFKWTFESISDNIPTIMLITILLTYGINAYLTAIFLPIDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATIVALIEIFYGLQEHYDGGEFITMFLFVGTIIVFGYLLEINFVDKGVEAYGINEPKIIKRRRRKIIVKNDSKEVPKNFRKNITSFQLSMF
Ga0310130_0000975_1783_2520F025505N/AMNNLPMIANRVEEKIQDVQLVIQNRELRIFKLGRKEVIPKITHVLNQLLPVYGIEVKPDQLMELIDFVASYKLISVDEIKLAFEKFAKDELNLNDHKLYGKIDLHAIGKILSSYITWRQKIYYAMDSDIMAKKEEEDRIKRLGKVAEDYDKDFDNKLKNFNKTLEDIPIFWYNECVKRGYINEWGLGEKEALWAEAQEIARNEKPTSDNLIERKIHIRKIEDGNMPRARALAYKLAVWRKVLLRD
Ga0310130_0000975_2703_3200F051874N/AMTILESIEQKVQLSVEAINAILPEGYFTQTTISSTDFGNSGYILIKKICPVNYIVDICKVRISDHYATNRFRENTEIMIDQLRFNLDELMTRIDRALNPDNYINAEIRTLTDHVMTSNFEIGKKPYTTLSEPTFLGEVTTKKGNPAHRYSWLKEEVRYEWRKKAN
Ga0310130_0000975_4100_4360F087195N/AMTQKERDLAISEAFYQIAIYAMVTHTHSREGLHRLENMMKIIDQIPVIEDTDYNNFNHRYYRGILEDAIKQNKDFNENFNKRINIP
Ga0310130_0000975_6630_7040F002778N/AMKEYNSKMLEIKAFCEEVNAWISTAPSAEMLDECDEYLRQLSAYYSRYTVISGMNESIYSYLMMTCIRDMPEEEYKRVKHSSTLIDFYVKGKYPKATAIFEQCRAVQKLLLVTSDNYRTLLSSFRQERILVSHLST

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