Basic Information | |
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Taxon OID | 3300034073 Open in IMG/M |
Scaffold ID | Ga0310130_0000975 Open in IMG/M |
Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17152 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (5.56%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oklahoma | |||||||
Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002778 | Metagenome / Metatranscriptome | 530 | N |
F004839 | Metagenome / Metatranscriptome | 421 | N |
F010541 | Metagenome / Metatranscriptome | 302 | Y |
F025505 | Metagenome / Metatranscriptome | 201 | N |
F033801 | Metagenome | 176 | Y |
F051874 | Metagenome / Metatranscriptome | 143 | Y |
F087195 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0310130_0000975_10227_10373 | F033801 | N/A | MVLMYWEIKWKSGKVITNAPTVEEAIKKFKEMRIEVPDKEITISKFGK |
Ga0310130_0000975_11041_11301 | F010541 | N/A | MEKQIFTVMYFGNAKRYQDLCEEVAAYSKRHAVEKIYAKFRNEDYFPDDFFLWGGIVKDCDGNVIAYSGSETIEYDGGYFYAEPVI |
Ga0310130_0000975_12413_12949 | F004839 | N/A | MEKNFTNTQFKWTFESISDNIPTIMLITILLTYGINAYLTAIFLPIDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATIVALIEIFYGLQEHYDGGEFITMFLFVGTIIVFGYLLEINFVDKGVEAYGINEPKIIKRRRRKIIVKNDSKEVPKNFRKNITSFQLSMF |
Ga0310130_0000975_1783_2520 | F025505 | N/A | MNNLPMIANRVEEKIQDVQLVIQNRELRIFKLGRKEVIPKITHVLNQLLPVYGIEVKPDQLMELIDFVASYKLISVDEIKLAFEKFAKDELNLNDHKLYGKIDLHAIGKILSSYITWRQKIYYAMDSDIMAKKEEEDRIKRLGKVAEDYDKDFDNKLKNFNKTLEDIPIFWYNECVKRGYINEWGLGEKEALWAEAQEIARNEKPTSDNLIERKIHIRKIEDGNMPRARALAYKLAVWRKVLLRD |
Ga0310130_0000975_2703_3200 | F051874 | N/A | MTILESIEQKVQLSVEAINAILPEGYFTQTTISSTDFGNSGYILIKKICPVNYIVDICKVRISDHYATNRFRENTEIMIDQLRFNLDELMTRIDRALNPDNYINAEIRTLTDHVMTSNFEIGKKPYTTLSEPTFLGEVTTKKGNPAHRYSWLKEEVRYEWRKKAN |
Ga0310130_0000975_4100_4360 | F087195 | N/A | MTQKERDLAISEAFYQIAIYAMVTHTHSREGLHRLENMMKIIDQIPVIEDTDYNNFNHRYYRGILEDAIKQNKDFNENFNKRINIP |
Ga0310130_0000975_6630_7040 | F002778 | N/A | MKEYNSKMLEIKAFCEEVNAWISTAPSAEMLDECDEYLRQLSAYYSRYTVISGMNESIYSYLMMTCIRDMPEEEYKRVKHSSTLIDFYVKGKYPKATAIFEQCRAVQKLLLVTSDNYRTLLSSFRQERILVSHLST |
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