Scaffold Ga0310130_0000906

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000906
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18270
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (19.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018718	Metagenome / Metatranscriptome	233	Y
F039629	Metagenome / Metatranscriptome	163	N
F057211	Metagenome / Metatranscriptome	136	Y
F085401	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000906_6224_6412	F085401	AGAAG	MLYEMMSATDYGVLKGYSEKSTRVHQIIRSGVFPAEWVQAPKKIGNQWIVFVDTNWIKDVSR
Ga0310130_0000906_6397_6636	F057211	N/A	MLKDHYYCLDQSGLTLELESFENQGIALELYFGGGKSLTLDIYDDLTEKFSEHYRTICSVLDPFIVEQLEEEVKKCFTK
Ga0310130_0000906_7658_7882	F018718	N/A	MEIKKFYLENYPTDDMGLEINEGSTFAGLLNQLYQEGYVYEYIGVSDSLIRERLFEKLALDLKVDYQYVYNLWN
Ga0310130_0000906_783_1004	F039629	N/A	MIEALDEVSEIPFEVFWDKFMEQRPGDYDKTYTQGIWLKMREANRVLAFEYMSRFGTDYKTPVLHLEAFDLPF