Scaffold Ga0310127

Basic Information
Taxon OID	3300034072 Open in IMG/M
Scaffold ID	Ga0310127_014567 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034072 Open in IMG/M

Scaffold ID

Ga0310127_014567 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5237
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (23.08%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5237

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (23.08%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F013517	Metagenome / Metatranscriptome	270	Y
F015987	Metagenome / Metatranscriptome	250	Y
F040073	Metagenome	162	Y
F044444	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_014567_1_360	F015987	N/A	MSNQQATTVKLEKLSVIELYQHYAALQKSLPFFTPESEELVKAELEACANLRSSKIDNIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLNYLRRVLPQDTNKITGRNYQFT
Ga0310127_014567_1057_1479	F002738	N/A	MIMSIDTYGLSSEQYTEFFHKNIRAAAKLYLDTCNILSSEGVGNVDFKTVSEMYQEAVYTTNDDCRRYQKSNNPDTLKENDVYGIVPSHQEIIEVVETLIKYTEALDTKLQALTDYVSNLVTVTTAGLEGIATTLDDTVD
Ga0310127_014567_1644_1865	F044444	GGA	LMTDDILEYARQLAMQPRNDTIMGDKRYDLEIPEDTHWELVKLAAELKMHHEDYAINVLIGHVESQLDRKATD
Ga0310127_014567_2223_3167	F002333	N/A	MTTQLQQQELNAAQSLIYTRTNISRAFQDFDDTEIAGIYLRDDNCLVVRRDGSEQTYPRELIKLAFTNYTHRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWNYTHALGHLTSNAKLQAHWADKFIHVSDIAKITAILQSDQTDIGHLVAPDGMRLTDRPIDMDSELDNGSEQRPVLSEPTCSCGSFQRQLSNLSTFQEEIQGFKPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWFYAPPKDSVSDGRFVLLYTNQGAQAPLSHWRNYKPNEVFTQHHAWDLFFNMMDASYVPFPGIALPQLKSALKK
Ga0310127_014567_3639_3836	F040073	N/A	MLKFEMSPEDMFWQEKMIRSINDCSSMSELKEMATLLTKVATQRQIAIKGLVADAMELMKENISK
Ga0310127_014567_861_983	F013517	N/A	MFESLLATVLPVLKDILWAASGALLTYALNKFQSQFIYET

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310127_014567

Overview

Ecosystem & Geography

Associated Families

Sequences