Scaffold Ga0310127_003447

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_003447
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15199
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005322	Metagenome / Metatranscriptome	404	Y
F011285	Metagenome	292	Y
F018509	Metagenome / Metatranscriptome	234	Y
F105051	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_003447_2753_3073	F005322	GAG	MVNLNSLEPEAKPLSPEQKLWRAVFMQAIQDTFGICTVAMSRDEHRESKYWWKNYSQDFIELCEMAGFDPQRTFEKLKRYDLIKKGIIWNYTTNGKRKFADVVTTN
Ga0310127_003447_3075_3248	F018509	N/A	MSGKIICPKCNGNGFVYSFNHDDRKKMPIDCDYCKNQGEVDITEDVMKDLTENKVLQ
Ga0310127_003447_3245_3361	F105051	AGG	MTISGYKKAISKLLKAYHKKWDCFGKERKKNGSKKSRT
Ga0310127_003447_4949_5062	F011285	N/A	MLVGCSKDISFDPATTISKELIRFIYKESLKEGPVME