Scaffold Ga0310127_002577

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_002577
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18480
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F019290	Metagenome	230	Y
F045612	Metagenome	152	Y
F086661	Metagenome	110	Y
F088510	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_002577_1319_1699	F019290	N/A	MIGEAFWGTTNIKVASAVAAFGGKLRTQDPVTRFIKPDGSQMVTFWFQSDGQGDKVKAEMERNWVNMQSDEESPIRYVRAALENRETLLGLVKRAEPIRVIQTGGQTLIVAENARPELKKAILKHI
Ga0310127_002577_217_540	F086661	AGG	MAFQTIHKADGSVEYLDNRTLAEAKSFRIEIIRQATNQVVIESGLDEATQQNAALGIYPPERCEAIKSYIAACRNEYLRCKELILAAQTNDEADAVQFLAPPVPEGM
Ga0310127_002577_537_671	F045612	GGAGG	MRYTYEDFMAALSYLECEGYIERFIDKDGSECVRICEGAEDCEV
Ga0310127_002577_668_901	F088510	GAGG	VSADDHSVLIEIREKVARMETRQAYILELLTDHKTKMDRIEQDAHGLKGRVWLVSTIVFGVLAAAWEIVKNRLLGHP
Ga0310127_002577_931_1287	F006138	AGGA	MAATTIGTTGLAFGLTTESIGLAQSFSETRNIEKNEVRNNTGDVVGVSYYNATTAYSLSFTAVSNGTYLAQAGSALATLANAATISGATIRIDSITVNKSNDAFVTVDISATGYPNVT