Scaffold Ga0310127

Basic Information
Taxon OID	3300034072 Open in IMG/M
Scaffold ID	Ga0310127_001268 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034072 Open in IMG/M

Scaffold ID

Ga0310127_001268 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29277
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (29.41%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

29277

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (29.41%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F011218	Metagenome / Metatranscriptome	293	N
F015723	Metagenome / Metatranscriptome	252	Y
F033779	Metagenome / Metatranscriptome	176	Y
F039112	Metagenome	164	Y
F093771	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_001268_1027_1197	F093771	N/A	MTKESADSVITSWSLTGAGLLVGYVHQALGLLVLVASLAYTLWKWRRDWLKEKNAN
Ga0310127_001268_1913_2311	F033779	N/A	MLNNRLATLTILTSVLLAAVSGCRTAQPILESVIVKDTVIVTETKYLIDTLEVMKDTVIYQDKVRLQLQYIDRKVVVEAACEPDTIRITQTKIVAKQEPKVKNWTLESYLGALAFILTIVYLLKRWVDKITE
Ga0310127_001268_2932_3132	F011218	GGAG	MQYYTNPAKRRKIDFILAECASLFANCDSTYAARQQAKYKEQELLAQIAKLDYHFAIQCGYLQQES
Ga0310127_001268_3526_3666	F039112	N/A	MTFSLSQETYTQTVVAQQAQIQALQSKIDELQARIEVLEQQAILFI
Ga0310127_001268_3681_4115	F015723	N/A	MAKIISITPTGQWQDLYKLEIRFDNGDFGTAFAKSQTPSYSVGDEVEYTKNEKGTIKIQRPNNFGGGFGGGSTPSYSAAPKTDDRSASIIRQVALKAAVEYACAAGHDVNTILANASTFNEWMNGKQSAATHQEHFASRNESPF
Ga0310127_001268_5123_5434	F009202	N/A	MYPSDDSHDLYIREKQLMLAGTAMFLAKQAADKANGREVQDEMLHHVMNCHYADLLLQQFIDYRQFIESKMNEAYLANAKLRVDNEEMHYEIERLQKIIEENL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310127_001268

Overview

Ecosystem & Geography

Associated Families

Sequences