Scaffold Ga0310127_000812

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_000812
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39931
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070057	Metagenome	123	Y
F073482	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_000812_12043_12342	F070057	AGGAG	VLTFKNLELSADQLSTARAAADAVFRAADLEPAQCWKHVVSMMAGGLFSRRPVAVWHDAEDRAVRAALGSWRKAPLNAMMDWSPETPPQAPKTPQEAEK
Ga0310127_000812_22922_23194	F073482	N/A	MKHAALALLIAAGAAQADVVAVATHENIRLELHDTVGPCQGRALWAVITDGNRTVSGCWIPQPPAEISVAWLDGDYTTLPIAIFREPEKL