Scaffold Ga0334990_0006282

Overview

Basic Information

• Taxon OID: 3300034068
• Scaffold ID: Ga0334990_0006282
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6432
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F004431	Metagenome / Metatranscriptome	438	Y
F007263	Metagenome / Metatranscriptome	354	Y
F017134	Metagenome / Metatranscriptome	242	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334990_0006282_1268_1438	F007263	AGG	MLDTKYIDETEFYFIKDEIKFHCDESQFVYVCKAHGEQMGCYYCEFNYDENCECEG
Ga0334990_0006282_2441_2566	F000447	AGGAGG	MGYVEIFRIDNEGAGWVDLSEATPDELFNIELGLLNEGAFE
Ga0334990_0006282_266_475	F017134	GAGG	MELFTVSCLNYEICGAQETFDNDSEYEIYGDDYICAECYASEEMEFFETIGWADSDALASAGFGMDEDY
Ga0334990_0006282_2899_3024	F085708	GGAG	MTTNRILTTLVQLGIGIPALLMARLVWREIVSDYREWAKSH
Ga0334990_0006282_3404_3553	F004431	AGGA	MTITYSLWDGAQFLGFFTATSADEMNKTVTELQKVSKNVVAHLRKVEQN