Scaffold Ga0334990_0002101

Overview

Basic Information

• Taxon OID: 3300034068
• Scaffold ID: Ga0334990_0002101
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11475
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (57.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007921	Metagenome / Metatranscriptome	342	Y
F008814	Metagenome / Metatranscriptome	327	Y
F020166	Metagenome / Metatranscriptome	225	Y
F021988	Metagenome / Metatranscriptome	216	Y
F091936	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334990_0002101_2302_2511	F008814	N/A	MDNKLTVLEEIIKEIGEELYQKWYNALATEDRTEEASKAMSINAGETAVWVVQTFMNKFNKAADELKGD
Ga0334990_0002101_5575_5781	F021988	AGG	MSNSFKKEDGTGTVPPANAGAPAGAVTSRETPKRYPRQGVKIDTNKHGIRRETSLIPKPPKKSGRKKV
Ga0334990_0002101_7876_7986	F020166	GAG	MKEPKIMKMDWRPLGYWPVYKNGKLTWEKDPDVQDE
Ga0334990_0002101_7940_8122	F091936	N/A	MESLHGKRIQMSKMNDGLDRSMRLKLVIEDMLKDIDMSGEEWNDRDKDGVAYWEKWNNND
Ga0334990_0002101_8115_8384	F007921	GGA	MIDWLVNRIFRWDPLRKAVFDEVRLYQSVDRSMWEYEKEGPTNLTWSEGDRWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWLREADAH