Scaffold Ga0335019_0304169

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0304169
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1000
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015570	Metagenome	253	Y
F024504	Metagenome	205	N
F032957	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0304169_385_531	F024504	AGGAG	MMDRPTVGITAPYRKSDYTHQDMLLDRIKDLEALVAKLEQRIKVLEAK
Ga0335019_0304169_68_364	F015570	AGG	MNDKLDQAFDLLEFDVTDQIRNMSYLAEQRKVATGVTDGTIQRALVRDLTENLRTLQTSNDPLLLRNDVLEEVAVELAKLPFGDTASSFAAFVRAMKS
Ga0335019_0304169_703_894	F032957	AGGAG	MDDFNPTTRMFARTLQEAFPKDYVNENIIEGAYYSAPHINDLPVLFGLIAVISMIAYAIWRYF