Scaffold Ga0335019_0040027

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0040027
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3228
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F007263	Metagenome / Metatranscriptome	354	Y
F009530	Metagenome / Metatranscriptome	316	Y
F011299	Metagenome / Metatranscriptome	292	Y
F087194	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0040027_158_349	F011299	AGG	MMTRKDYVAVAEILKYASDKTHPAVFSKMVNDFAEMFAKDNERFDVTRFHEASGYHVPKFTSR
Ga0335019_0040027_2064_2243	F003965	AGGTGG	MTTLTITKCAEHAPHKSSISEVQDTQFTFCETCENNIERWYDDTDPERLPMWTDWKVSN
Ga0335019_0040027_2593_2775	F009530	N/A	MGELIMTITYSIWQGSKLISIDNVAHDVKAIDNLIKTLNDSELGKGKKFTANVQNIKVTA
Ga0335019_0040027_2951_3064	F087194	AGG	MTLDEYKQMVEAQRLASLAIALEALSKSSAIAKEMNK
Ga0335019_0040027_869_1030	F007263	AGGA	MNIIDKTDFYEIADEQFFCCDESQFKYYCIEHLEFMGCYFCGFDYDKDCEEQH