Scaffold Ga0335019_0003941

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0003941
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9971
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006622	Metagenome	368	Y
F014143	Metagenome / Metatranscriptome	265	Y
F082346	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0003941_1406_1564	F014143	N/A	MNTRFLKRVRAIFATYDAPPDVIRSYQRQWIRSVRQLGNKWLVAKHIERIEQ
Ga0335019_0003941_4311_4460	F006622	AGG	VNEYQKQFDLFCKVFVRLCVAWWVLGLLQHLPDELASKIVDKLLGMIGL
Ga0335019_0003941_897_1103	F082346	AGG	MIRFSKENLLNELQNQIAKMEQIWGFVSDNGTNQIKDQTDFDRVVAYGEYRALNDIYESVRDNTFLNI