Scaffold Ga0335019_0000065

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0000065
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60076
• Total Scaffold Genes: 119
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 90 (75.63%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000714	Metagenome / Metatranscriptome	924	Y
F001781	Metagenome / Metatranscriptome	635	Y
F002245	Metagenome / Metatranscriptome	578	Y
F003582	Metagenome / Metatranscriptome	478	Y
F008132	Metagenome / Metatranscriptome	338	Y
F009685	Metagenome / Metatranscriptome	314	Y
F011938	Metagenome / Metatranscriptome	285	Y
F018162	Metagenome / Metatranscriptome	236	Y
F021111	Metagenome / Metatranscriptome	220	Y
F026195	Metagenome / Metatranscriptome	198	Y
F050154	Metagenome / Metatranscriptome	145	Y
F061853	Metagenome / Metatranscriptome	131	Y
F092053	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0000065_13224_13361	F061853	GAG	MNKKTITLVGLLIALAAVAFAAYNSLSQLKDIDYDLFDTEEDEDD
Ga0335019_0000065_14191_14358	F026195	GGA	MMGFLDNLEEWLDFGEDVDKDPELETKSEAGYSTGKWSDDDDYKGNITPFFGRNR
Ga0335019_0000065_17210_17350	F009685	GAGG	MKTTDKYVDTVLAEAQRLLWGGSETENIEAHNLIAKLIKDRLGNDE
Ga0335019_0000065_17337_17651	F001781	GGAG	MKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTINNILDDETYKAKVTQDQMWDNLCEAVSAGHGFSLEYGAEQHQDDVLEWMTNRDYIVDTMWEEEEDEDEDN
Ga0335019_0000065_17641_17913	F000263	AGGAG	MNIEVVGLPPHLQRMVNAGVTGLDIMHGELKNLMLIAEQELTNAQQIEEESEEAMDSMERKYWEGVLDTYTELYKLTYDLSFVIGARDEA
Ga0335019_0000065_17910_18074	F092053	AGG	MKLSSDVKEDLQDQADQIIYFESAMSSENKASKAVYQRLVEIYKVAYEAGVNSK
Ga0335019_0000065_18071_18226	F050154	GAG	MKLHLISLNQDMEKDLNVESKINIQGQIMATEHLLSVATDIMNSSNERVYG
Ga0335019_0000065_19935_20258	F018162	GGA	MLAQLAEAVFKARPRWSDPAYATRITISQMINNDWNSETGWGLHVNEIGDNEHKVAIVDFEQQTFSLHEEAPRNDKDNKVNGMKNQAIFTMDLSNFVEKYADVVISV
Ga0335019_0000065_20909_21433	F000714	N/A	VEDATIPYTDTPITETKGNEMETAETTITTVPDTYNPNLLVTYKVIKGYSDAEYATDKVTSIEWDLHNARQAQKRVGVFEDKINTVKDIIGEAYADSQDQDTLRAIAEALGIELTRTVEWTASIEVSGTIEIDLLSDYDTDYELESEITDAIYADSHNGNIEILDQEVCNVREA
Ga0335019_0000065_24964_25176	F002245	N/A	MKVPHTVVFEAIIDLDKIPANLLPALINLPQSEIEKMCKGATIHALGMSNTLEVANENNTWAELTVKGNI
Ga0335019_0000065_28411_28605	F008132	AGAAG	MMTKWDTIQADVSDAYVYLDEEEAYNNALNNEDEEDFFGFSKAIELDHLTDEELDNVATMLGIK
Ga0335019_0000065_33929_34051	F021111	GGA	MESLKNPLTEIQTDGGTIKETDAMGREKFWEDLGRPDDRK
Ga0335019_0000065_3768_3911	F003582	N/A	MNTYRVKIEIDAEVEAFSSEDAVDYANDIFGIDDEVKNVKVVSVKEK
Ga0335019_0000065_5581_5778	F011938	GGAGG	VKEYYDVVHVVYIHSEQCHGTVEKLGAFASTVNYNKDGMEYSELMENEEFSIIDEIIFKHIEESE