Scaffold Ga0335001_0000068

Overview

Basic Information

• Taxon OID: 3300034064
• Scaffold ID: Ga0335001_0000068
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55047
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (84.27%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004305	Metagenome / Metatranscriptome	444	Y
F015965	Metagenome	250	Y
F026015	Metagenome / Metatranscriptome	199	Y
F039599	Metagenome / Metatranscriptome	163	Y
F046202	Metagenome	151	Y
F047641	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0000068_15523_15744	F039599	GGA	MLSEEFIKQIFFQSDKPRKDALLADEVDIVQFAENVIAVARIEIAKQEHARCVAMVKDMNRVVGETLEKYAPR
Ga0335001_0000068_22135_22275	F046202	AGGAG	MFDSFGDFFWSFMALSGVMFWVCFAVFVLMVIRRNRRKFGFRKDIY
Ga0335001_0000068_36612_36791	F004305	AGGAGG	MSVTLKDEQSEAVRQQHRNATGAWINGQQLKEESKATQPKANSDHGNFSQNKGVDKKNA
Ga0335001_0000068_42473_42712	F026015	AGGCGG	MGKVGYGGVADQANTSDGFASDIGAQNIVGGTDFGLDVGDGGVVDMYGGTPVATFYIADETSPGYVLQEDNSKIILEAS
Ga0335001_0000068_4997_5440	F015965	GAGG	MLVNSKEKQLGEQAILMIAAEETKSKYSAAQVYAALVAEMNLRGTTTYRAGNTIFMMHHAKGRVGTFRALNADTARNYLENSYEFIQAAYKMGFDTLVTEFEDPTIINIFKAISRNPPRDQMGYKAERTNKGFRVTVKLGPKREDKE
Ga0335001_0000068_52767_52922	F047641	AGG	MKKLLITEQLLNAIIGYLGTRPYQEVFQLVEALQAEAKDQPKADDGQPNAN