Scaffold Ga0335000_0000057

Overview

Basic Information

• Taxon OID: 3300034063
• Scaffold ID: Ga0335000_0000057
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81639
• Total Scaffold Genes: 114
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (42.98%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002621	Metagenome / Metatranscriptome	542	Y
F005206	Metagenome / Metatranscriptome	408	Y
F007856	Metagenome / Metatranscriptome	343	Y
F012771	Metagenome / Metatranscriptome	277	Y
F016961	Metagenome / Metatranscriptome	243	N
F028149	Metagenome / Metatranscriptome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335000_0000057_1_249	F007856	N/A	MTNKTIVACDPGVNGGFAVHTKDGILLFAMPESLPDMAQLLSGFKVADSHLWIEKVPKFVSKLTPSSSVATLHENYGIVQGLA
Ga0335000_0000057_1557_1976	F005206	N/A	MKFTVDRSQAEVKPFASPGEYIVTVNSCKDDNLDKNGNPVCTLRYKGGNGEVISDRFVLKETMMWRLQALISATEANIADGDEFDFSIGGAFFRFLQGFVGLQLVVVIEEEKYTDKNGAEQVTLRVKRMKKVPVDVDDI
Ga0335000_0000057_221_355	F016961	N/A	MSTALTIISMAILLPLCVIAGIYVGHSLTIKSQQTNDKQNNRSL
Ga0335000_0000057_62719_62943	F002621	N/A	MEKHPRLSRTIWLIALLDCLGCQMTKVVLVPSGDPVLLAEPTRASVYAFDKAGNLVGPSTVKIPAGWYALPKAK
Ga0335000_0000057_66249_67856	F028149	AGGAG	MASGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENPTGAACTGQPCDPTENKIGWGWSRNEYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAAELSSSLLGGNAFACALGLPAINFSWVGAGYVTLRVTDNAAAPITAASLGRLTPEILQSRVTRQYFLGAIQAGKEGYDSLQLHTDKDTFRYLQKTNPTLYDAWRFGVFAPAAKEFFKYGFMGFVGDFMVKVLQFPLRFNPTATAGNYTLVLPYKNVAATEGIKSVFNEDYDNAHYQISYINNPRALRVMPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCSGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCVEIIPICEADAESYAAQNYNSADPVCGVTVQFTAIANDAGNFVIGTTGILCDDNIVTNAGISEATPAALVAALQTVWDAEFGTASGTWSVVSGNVIQLAGSAIGTTTEVVPCTNVTLEFAI
Ga0335000_0000057_80871_81059	F012771	N/A	MKSAIGIGIKGTSKPKRPTAKVLVVSDETHKRLKDYAMKMGYKTQHIADEAVAEYLARKESK