NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0373914

Scaffold Ga0334995_0373914


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0373914 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)902
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003456Metagenome / Metatranscriptome485Y
F026830Metagenome / Metatranscriptome196Y
F056431Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0373914_126_482F003456GAGMPTKYDRVKGSVFETGILKLLRTIKGFFVERLTKAGSKDEGDIVCVISGKTYILELKNVKKIDLPQFWREAQVEALNYANARGLGEVPPAYIVVKRRNAPLEKSWVICDLEQWIKEKQ
Ga0334995_0373914_16_147F026830N/AMDKGETVMPVPEGNITTSEILVPVVEEVVEVVEEAEDDLPELS
Ga0334995_0373914_758_901F056431N/AFGAHTADGSKYAQLLVNYAAVQISDQNEFGWMLRKDTMAGYQGGYNV
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