Scaffold Ga0334995_0054069

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0054069
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3261
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006885	Metagenome / Metatranscriptome	362	Y
F010599	Metagenome / Metatranscriptome	301	Y
F045545	Metagenome / Metatranscriptome	152	Y
F070870	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0054069_2109_2240	F045545	GAGG	MIKQIALFFICKFKSHSLVDAGSCPFTGKNYVACLRCGATITK
Ga0334995_0054069_2216_2362	F070870	N/A	MWSNNNKMKKKTKIIILIVLSFLTAVSLWTAANFKKISDLDIFDIEEN
Ga0334995_0054069_2856_3218	F010599	GAG	MEMMFLIFFATLSFSFALSYWATFDKLKKSNLLVAELFIKNRALEEVNSQVNNGINMSDDTLHKENFIKFLSDSRDWAFEYIEKSQQTIKEVSDELKVKGLDNYSDKLLALLPEMGQGKK
Ga0334995_0054069_633_1061	F006885	N/A	MEYLLIIGLTLFLSWSIIKVSNKKRITFLKNIKYRQSDMYEMIKDVIPKQRFDKAKFITQSQKHVQKNMLRVVIEKDKAYWILGNVFYTADAINGRVDENTIKPLDIENMSKKELDKMLSILDDLKQGVGPNDSGSTGNKRI