Scaffold Ga0334995_0042962

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0042962
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3759
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011484	Metagenome	290	Y
F017469	Metagenome / Metatranscriptome	240	Y
F075658	Metagenome / Metatranscriptome	118	N
F103146	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0042962_136_252	F103146	AGGAGG	MPEPRYLGGDDYALNGVEGEEEEAGDTGLPDRMWEDEE
Ga0334995_0042962_1729_1902	F011484	GGAGG	MRELEQFLNTEAEWVLERLSTGTESADRNYYQGRLDQLAQVRRYLGQPQIMRERAGE
Ga0334995_0042962_2_136	F075658	GGAGG	MSNVVELRNGTVKRIIFYEVSDAQNIAIWGGESPSEALKWYRESP
Ga0334995_0042962_382_534	F017469	N/A	MYGGGVSMNICQFCGWEVKKPEWYNSYDGGYACDDCLMDQAIEREKESAL
Ga0334995_0042962_683_823	F006842	GGAG	MKAIPAFCGDHLVPITECDCLSYMREIANSAEKLIQLTKEREELSK