Scaffold Ga0334987_0067917

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0067917
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2864
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002044	Metagenome / Metatranscriptome	599	Y
F002162	Metagenome / Metatranscriptome	588	Y
F006539	Metagenome / Metatranscriptome	370	Y
F032636	Metagenome	179	Y
F042333	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0067917_1504_1698	F006539	GGA	MIETTAPWIVLYSILGYFIVWGIHSKIKENYGQTMYWRGRKHGYDMHRRIVDAKRDQVFDYDKN
Ga0334987_0067917_1795_1902	F032636	N/A	MAVSQLLESRMGLETDYKHRTIDDHIDEFEDIGVI
Ga0334987_0067917_226_432	F002162	GAGG	MLFLSFNQSDSIVPNYEYACDREGSTIVLDLPMQHEIPLCQVCGFELTRVYTAVPAIFKGTGWAGKNG
Ga0334987_0067917_2604_2858	F002044	N/A	MANTRKTTKRIKINRRVVRHTPDPSKIDAHYIALHECYKAARKAGFTPEHAFWLMTEIKTFPNWVVGDGGIIPSIDPSDDEDDD
Ga0334987_0067917_3_182	F042333	GAG	MDGYDTADGFRVFQCLKCCAIGTKNLAEASDTQEPVIRCEQCGSWQFVDQKCHTCALIGA