Scaffold Ga0334987_0050813

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0050813
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3440
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007164	Metagenome / Metatranscriptome	356	Y
F100669	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0050813_169_642	F007164	N/A	MSEKQIGMELQKTVKQLEKAKENAIQQMGEAIGLAADAGDILLSARVEGLNLDTIQEVAGINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPSQWTPAQRTQFLEEARPIVEAYKEAGGEL
Ga0334987_0050813_2_172	F100669	AGGGGG	MTKVICHLRKFLHKAQVRLTQARSLIIGYLCKIGSIVRGINELGDSYNAKSTQNRFR