Scaffold Ga0334987_0014509

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0014509
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7220
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F024318	Metagenome	206	Y
F030017	Metagenome	186	Y
F104771	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0014509_1284_1616	F030017	N/A	METQEIMDEVKRLYIEGFTRKRIAAKLGVDKEKVGYLLYTKMKLHEIHPRKLINENIFNILTDHQISRVLTLATYGYNCKEIAEDQKLEYRKVKKLLDVAQSKNMIDKKI
Ga0334987_0014509_1598_1735	F024318	N/A	MSKYTYLGKEIKRPADLAPRGVKSTYQTEKLPFNETFERLWKLKK
Ga0334987_0014509_2782_3057	F104771	N/A	MGKLFNDSEMYLDQEVLFYYEGEEYCWTGHYEVKQCGEEADWDYCGDSEIEVEIETTKAITKFNEETNGWDEVTPTNSLIYELVLYIERDL
Ga0334987_0014509_4515_5051	F001775	GAG	MIDQRIQIAILSFIAGVILAFVVYPRPEVETVYKFETVTKTDTLFVDKLSTVYIPKTKIKTEVVRDTILIDFKPQISLFKTTIPFEYGNTYLSGEVLGEVLKMNATNDYKIPVVTNTITNTETKTIIEKPKGLYLGAVVNSLLKPSASVSYLDNKYLFQYQYQPMEKLHQIGVAKKLF