Scaffold Ga0334987_0008684

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0008684
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9559
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (26.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023571	Metagenome / Metatranscriptome	209	Y
F042214	Metagenome / Metatranscriptome	158	Y
F058099	Metagenome / Metatranscriptome	135	Y
F066528	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0008684_2864_3073	F066528	N/A	MIQEYATAADFTRWREQAERMSIAELYYAAADCRQAEYAMRGWNPIREGYYSDQACTFGDEIRRRNLAR
Ga0334987_0008684_4199_4354	F042214	N/A	MQKFLTGEEILQLVTTGMVELTDDLMLRMSESYEDSEWYNDPNNVMSRHHY
Ga0334987_0008684_4691_4945	F023571	N/A	MNFSSLTFSDHSVIKGGTKAQHTFENGWAISVVAGPKDSGLYGDIQHDTFEVAVMRPNGNMLEDVILWQTPVQITTMMRLIAML
Ga0334987_0008684_7763_7909	F058099	GGAGG	MTKELLIAQLRQGTNGNSILQILDALCDGMDSSESSEGIIPTLDEIQF