Scaffold Ga0334987_0005449

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0005449
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12141
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (81.48%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F001834	Metagenome / Metatranscriptome	628	Y
F002357	Metagenome / Metatranscriptome	567	Y
F007469	Metagenome / Metatranscriptome	350	Y
F028151	Metagenome	192	Y
F037698	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0005449_10062_10448	F001834	N/A	MPSTILSDIRTPLATALAGVAGNVYSFVPETVIPPAVVVVPDSPYLELETINKSTIHTKINFTISIAVAYNSNPASLDNIEQLIMSVLAVIPTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA
Ga0334987_0005449_1212_1412	F007469	AGGAGG	MGELQIIDGSGLTATFTNDGIKVEPSTTYCDMCNDDRLLHEGDLLRCYNCHAINRIPYPVHKEPNA
Ga0334987_0005449_1413_2075	F002357	AGGAG	MAFNLEDYEDVATLNKWFIANYPMGRSDLSVISHDPEKGYILIQSTLWRDSKDAAPAVSNVAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVETNPSFKEKLEARQNMYGKPGSKSAQIETILRDSFEADKKPEPVAWSVGEVVSEIGASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKQCDAKWAKLTANGKWYFEGGE
Ga0334987_0005449_2361_2573	F028151	GGCGG	MNAWLEARDMGFVIMWTIVGLTFAAWIIYEIRDTAFQNGYWKGRADGWNMHRRMTNIKAQSDEVFDYDKN
Ga0334987_0005449_6357_7604	F000468	GAGG	MTVWTPDWKLTVEGVDYTDIAIADIAHQAGRDDIYAQPNPSYLQVQIVALSGQTLPFAINNGMTLQVKDSTGTYQTLFGGNITDVTVEVSSTSSIATVISYTILAMGALVKLAKEVYDSTLSQDFDGNQMLTLLSYSLTNSWTEVSAAQTWATYDATITWANAENIGLGEVDTPGLYEMENRGNQPDTIYNIASAIANSAFGYLYEDAQGNIGYADADHRQTYLATYGYTELSANTAIGAGLRTTTKAADIRNDIYINYGNNFGSQKTATDTTSIATYGYRSETINSLIHDADNAQEVADRYISQRAFPFPTFDSITFPITNPELDDNDRDALLSIFVGQPIHITDLPSQISNGAFEGYVEGWRWSTRFNELFLTINLSPVSFSQVAMRWNTVPATEAWNMIDNTLTWENATIVA
Ga0334987_0005449_725_844	F037698	AGGAG	MCDSHDQGEHEIDWAYQNKLHKQWLADNPDAGYIGWMSI