NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0003389

Scaffold Ga0334987_0003389


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0003389 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15327
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (47.37%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004134Metagenome / Metatranscriptome451Y
F007919Metagenome / Metatranscriptome342Y
F008358Metagenome / Metatranscriptome334Y
F013889Metagenome / Metatranscriptome267Y
F029435Metagenome / Metatranscriptome188Y
F074911Metagenome / Metatranscriptome119N
F090316Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0003389_1067_1309F004134N/AMKHPANDWDFDDTIEEAFQEWFNDLNGGFALRSEYFFGDCEVQDVNTRKDLMYKWLHSAFVVGYNMGRMEGLEVGLTNND
Ga0334987_0003389_1306_1491F007919N/AMTERVKFTQVSRVICPKTGIHYLDAIDENGQHWIAQMETGVERWITYKEVWKRDPQQPFD
Ga0334987_0003389_1988_2161F074911GGAGGMILNEEVIKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIFQMGYNEGSYDMSYYE
Ga0334987_0003389_2356_2538F029435GGAGMTKQELKELLTPEFLSTLHSAVECCNWKVDMIETMEFCNWCYRLAGQPEPYYDVDFEMED
Ga0334987_0003389_3151_3282F090316N/AMPDDLQREEEIFLKALEEYKEKKSQEPKDKTTNTLPAVIAAVL
Ga0334987_0003389_5375_5602F013889GAGGMSRTYRKTEGMHSGALRFPHTFNEIKKLDALLHEEDLEGLPFSGLNHIKAREHNLPTAWDDKVVSAYYQEDYHTA
Ga0334987_0003389_5631_5876F008358GAGMNPYYIWFIIFFCIGYLIVTDNSVARLFILLTKLAEVEYRKFKWWMVHNPMNPIVRYFMWRRSLQLAKELQEELAKKQENL
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