Scaffold Ga0334987_0002910

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0002910
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16528
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (86.96%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F002598	Metagenome / Metatranscriptome	544	Y
F015600	Metagenome / Metatranscriptome	253	Y
F025743	Metagenome	200	Y
F063708	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0002910_12192_12353	F001507	GGAG	MSTTYKPYTIHELVEEIYEDNFSHFDFMENMNGGDCDCNLHMTMNTILKYWGE
Ga0334987_0002910_12947_13102	F063708	GAGG	MNQLIEYMKIHLISLEQDLESNPESINVVDIEGQIYATRHLLSVAEGMIEQ
Ga0334987_0002910_13099_13380	F015600	GAGG	MMNTALDPRLQKLIDLGESGTDILHGELKNLMLEAEKEYNEIATEEEEGGYSDAMLSMDRTRAEGRMDALVEVYALTYQLAFAIADRRKNGNA
Ga0334987_0002910_5154_5363	F002598	AGAAGG	MATKLYTIESLLVGKNYRSRNRHFEGEIVSAEKRDGIWYGENTEAYLIGINAKGRLSTQYATIAVKVAD
Ga0334987_0002910_7128_7370	F025743	AGGAGG	MTDTMKTMELVYADLLTPSQLMEGDLIKIDDDIVEVVSIEDDATGDNYVITHRNEYGEENEYTCNYEEVFKFYVFVEEDE