Scaffold Ga0334987

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0000828 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034061 Open in IMG/M

Scaffold ID

Ga0334987_0000828 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29339
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (41.07%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

29339

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (41.07%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F003601	Metagenome / Metatranscriptome	477	Y
F053230	Metagenome	141	Y
F067649	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0000828_10544_11485	F002333	N/A	MQLQTELNSAQALIYSRSNIGRAYAGFDDTEIAGIHLRGDNCIVVRRDGDEQAYERTLIKAAFQQYTHRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWNYSHALGHLTSNAKLQQHWADKFIHLSDPSKVVALLQNDQTDLGHLVAPDGLRSAARPIDMESDLEENPSGIQASTAEPYCSCGSFQRQLLNVSLFQQEIENFKPWCIHLTWFHKYRELLCKRTEVRNALPSGTPDKCVAWWYAPPQDHVSDGKFVLLHTKSGAQAPLTHWRTYKPKEVFNQGHAWDLFFNMMEAGYVPFPGTALPQLQSAIKKK
Ga0334987_0000828_12042_12161	F053230	N/A	MFEAFASAVLPVLKDILWTAAAALLAYALNKLQSKLQNI
Ga0334987_0000828_12165_12866	F001018	N/A	MSQITQVKLKDLNILKLYEHYGALERSLPLLTPESQELAQAELEACASLRSEKVDRIYYAMAAHEDALERIKKEGDLITQAKRYHESQLRSLKNLLGWLRRSLPLDTNKITGRNYQFTLTRKKDLTVEITSDPEFWHSEEQATYCIEEEITTTKRVVLRSMSGEVLDERTEPKTTTKIVPNLDAIRSAYQTGRQLPSGVKVVQEYGVRSRRIYGEPRVDLEASEYPGHLLPED
Ga0334987_0000828_25085_25273	F067649	N/A	MEIPVSVGEWMNALQNRMMNAMDGDCFLLPTYMHLHAFTILKDGMFAERDFKVELQNTKEAQ
Ga0334987_0000828_765_986	F003601	AGG	MTEYTDDQLLAQALANIGEYIHTHGTPDYVLIDEQDPRNEDDYDTWSVGMEPIPGDQTWKSTAIDVTSTEVND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334987_0000828

Overview

Ecosystem & Geography

Associated Families

Sequences