Scaffold Ga0335023_0008794

Overview

Basic Information

• Taxon OID: 3300034050
• Scaffold ID: Ga0335023_0008794
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5951
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003456	Metagenome / Metatranscriptome	485	Y
F009331	Metagenome / Metatranscriptome	319	Y
F026830	Metagenome / Metatranscriptome	196	Y
F044984	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335023_0008794_313_609	F044984	GGAGG	MEAENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKQDELQGKKWISIDGTTVLRVGVHTRANGANDLAYSSNAGENEGNNGGEA
Ga0335023_0008794_5194_5373	F009331	AGAAG	MICQNCRTAGDENWVAQYKRAAKFHSKCDDKGCVCQHKTGPGYVKRDGSKVPLMQTQSP
Ga0335023_0008794_5354_5488	F026830	AGGA	MVKGETVMPVPEGNITTSDILVPVVEEVVEVSTTEEAEDDLPKL
Ga0335023_0008794_5467_5769	F003456	GAG	MKWLRKSGVIAERLTKAGAKDEGDIVTVIAGETYILELKNRATLSLPEFWREAQVEALNYSKARGLGEVPLSYVIVKRRNASIDQAWVIQDLAQWLKEKQ