Scaffold Ga0335023_0000221

Overview

Basic Information

• Taxon OID: 3300034050
• Scaffold ID: Ga0335023_0000221
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34756
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014495	Metagenome / Metatranscriptome	262	Y
F015592	Metagenome / Metatranscriptome	253	Y
F042313	Metagenome	158	Y
F063699	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335023_0000221_10493_10825	F042313	AGAAG	MTDFPAILYRTPGPFKKPRGGTYATRPAADKEAFDALIAKGWFASYEEAKGGKVAKEIIESAESFEDAVDEVSDATRDELEDKAKELNVSFNARTSDKKLAERIATALEE
Ga0335023_0000221_27036_27248	F015592	AGAAG	MKFLAALLGIIDKLLGAWAEHRWKQQGRQETIKEINEAINEQIALGEAAIITPDVERTERLRYRFDRSRK
Ga0335023_0000221_29271_29402	F014495	AGG	MIKPQQAAPMGKKHRVSSDSAWPLRGADGKTFAERRKEQEQSK
Ga0335023_0000221_33128_33334	F063699	N/A	MTNVDQAIAEFYDLARAHKIRAYQIANEAGLTRVTLSNWKSKRNEPTLGAWLLANEALQRLVDQKIKA