Scaffold Ga0335023

Basic Information
Taxon OID	3300034050 Open in IMG/M
Scaffold ID	Ga0335023_0000133 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034050 Open in IMG/M

Scaffold ID

Ga0335023_0000133 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42839
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (27.78%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

42839

Total Scaffold Genes

72 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (27.78%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019994	Metagenome / Metatranscriptome	226	Y
F031848	Metagenome / Metatranscriptome	181	N
F081032	Metagenome / Metatranscriptome	114	N
F084134	Metagenome / Metatranscriptome	112	N
F085605	Metagenome	111	N
F086647	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335023_0000133_11439_11729	F084134	N/A	MNPPTPKKAAKRGRPAKKTITIDESSCSLDSLINQQIYEDFIVMRVCNNPSWVIVRMDGLAVPVKCPARLSNKLVGKRIKVCLVSADPEDFYEYAS
Ga0335023_0000133_25126_25386	F019994	N/A	MASPTSYDLQGQGGGIVLSTAATTYTGKIRWIQVVNDAVLATVASASGSITGASRLQTITLPAGLGIGGDFSSVVLTSGVVIVYYA
Ga0335023_0000133_32670_32828	F081032	N/A	MRVTHTPFKTKTRAIGSDLEMTLALLGALKNPNKSAISKLGKIATTLTKLFK
Ga0335023_0000133_34723_34938	F086647	N/A	MEIEILTPVDAHKNGYLSLTTPYNQENPQDVEWMRTVLHDLKGCKIVLVEVIGGLEVARHKSEMILAGQRI
Ga0335023_0000133_34935_35141	F031848	AGG	MSDLFPETGGNLSPRLKWQEEKRIKTLRREDGKWVAFKSETSHSFTDEVELDAVIGLAKKLKLKLWNE
Ga0335023_0000133_39204_39491	F085605	N/A	VANYTKDNGFRIIAGRPRHKPWEQRVTATFRLTYETYQRIQRLAKRERIIPSKALELLVRTAESEKIEPTQVVDYTKIHHKSSYSCSNILDKHFK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335023_0000133

Overview

Ecosystem & Geography

Associated Families

Sequences