Scaffold Ga0334946_000016

Overview

Basic Information

• Taxon OID: 3300034026
• Scaffold ID: Ga0334946_000016
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 272815
• Total Scaffold Genes: 225
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 167 (74.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040007	Metagenome	162	Y
F062146	Metagenome / Metatranscriptome	131	Y
F069865	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334946_000016_173674_173901	F062146	AGGAG	MPFITATREDGATLLLNVDRIQYVAYQDAAGGQEVLSVVFDTNPPAQGRPGTNEVVVHGEEARRVWAALGAVLGL
Ga0334946_000016_187811_188026	F040007	AGAAGG	MPLESNSAASVSPALVFELENGSNFTFNFQMDGRVTVIGFQDGRAVTGTLSEEQAAELRDAIGEYIHKRNG
Ga0334946_000016_203773_203955	F069865	GAGG	MWDRKRQIIWLAVGLLFGTFSLYPVARDDAGRFDPQYFAQLEVLLVVVICVMFYFYSRKP