Scaffold Ga0335005_0001540

Overview

Basic Information

• Taxon OID: 3300034022
• Scaffold ID: Ga0335005_0001540
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18090
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F018135	Metagenome	236	Y
F086805	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335005_0001540_121_282	F000821	GGAG	MNEEYLAAKANLCLNQAEIDLKQEEIARAIKNLERANSALSRLFGLEGEADDN
Ga0335005_0001540_1948_2112	F086805	GAG	MMNNLTPRGWLVLGIAIGLAIAGLWWVSGHIWYIEGEGYCIGTLLECDPAAFTR
Ga0335005_0001540_973_1131	F018135	AGG	MTIERVKHSGAYVISEIAGEGSNAYLFTRSYYGYTLAQAKAQFKLAIEGEVK