Scaffold Ga0334998_0000655

Overview

Basic Information

• Taxon OID: 3300034019
• Scaffold ID: Ga0334998_0000655
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29755
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (14.89%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F014605	Metagenome / Metatranscriptome	261	N
F030017	Metagenome	186	Y
F044503	Metagenome	154	Y
F069854	Metagenome	123	N
F095170	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334998_0000655_10405_10830	F069854	N/A	MRNIKPFIRKAYWTALNNTITYKGALVPCYDTFAPDSAVFPYILIGNQTQEDDKDNQEYNYITTITLDVVTAGIAPYGRIDADLIADSILQIVCLYPENYLALQVGKIVTAKLIQQTSLSSITDTNIVHREIMTIENWING
Ga0334998_0000655_16_303	F014605	N/A	MIVNLAIALTDIEGNKITSENGEFMYLSKMVGNALFSAEEKDDPIRLYELAKKIYYSEGDIELSKSDADLVKEKVKAKGFTVLVLGPLYEALKDK
Ga0334998_0000655_20296_20544	F005529	N/A	MPRIPPVKTDYSLEIRYRLRDGNWSPWSNKGKGKFECIELVQRQIRTLAASYQGREKEVRFEWNGKLCSFTGEPTGQTIILM
Ga0334998_0000655_21576_22172	F008073	N/A	MEFVCGLKQFKEYKKEEANELLGCLSKLFGSYGWMTEDRVNYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKDREPTNEEIAYWIEVGKQTFRDNYQEAKETGNCKHLADWGIYWFNKFQEKGILKPWEFNVQEIESDVRKELRLTTRYVEESTVGAKTKNKIWKLFILQAIKDNKNLDQLI
Ga0334998_0000655_23017_23184	F044503	N/A	MDGLKNMRGRNLTEYQKELIFEAWQDRKQIKVIAQEMGLSYGCIYFQLKKRSLVG
Ga0334998_0000655_23970_24302	F030017	N/A	MELDEIMIKIKALYLEGLTRKKIAKLVGLDQQKVGYLLYTKMRLHELYPRKLMDENIFQILTDHQISRILTLATYGYCCREIAEDQNIEFRKVKKLLDVAESRNMIEKKV
Ga0334998_0000655_26690_27238	F001775	N/A	MNFSTDNEKIKIATLAFLAGVLVAYIFFPKTESETVYKFETVTNTDTLIVEVKDTVYVPKTKIKTEVLRDTVLVNFKPQISQFNASFPFEYGSTNVSGEVLGEVLKMTATNNFKMPVVTNTITNTETKTIVEKAKGIYLGASVNSLIQPGAKVSYLDNKYIFQYQFQPLEKLHTVSVSKKLF
Ga0334998_0000655_29393_29680	F014605	N/A	MIVNLAIALTDIEGNKIKNENGEDVSLSKMVGNALFSAEEKDDPIRLYELAKKIYYSEGDIELSKSDADLVKEKVKAKGFTVLVLGPLYEALKDK
Ga0334998_0000655_9948_10412	F095170	GAG	MAKVNGSALFVTVGLNQVAKSTSYELSAEMGQLDKTSNESGFFADHISRLASWSLSSESLYIQDGFSFGDLFNAYVNRERIYLSAGQEDNLTFIGLAMIESLSQSAPMENVATISANFKGVGGLYPTILPAERFIIDELFEIIIDQDGNFLVYT