Scaffold Ga0334991_0019759

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0019759
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3964
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F006385	Metagenome / Metatranscriptome	374	Y
F011487	Metagenome / Metatranscriptome	290	Y
F026557	Metagenome / Metatranscriptome	197	Y
F071231	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0019759_1169_1312	F002515	N/A	MKKSKEELRRLMELRRSNAASAVPSKKVYSRKGRKCQSDMLHLKENN
Ga0334991_0019759_3000_3152	F006385	GGAG	MILDTGTLIAITIALAGSVGMMIAFWQRNVKLEKEIRRLQVSLRTERLKK
Ga0334991_0019759_3149_3349	F071231	AGGTGG	MMTRKDYVKVAEILSNYFATSVFDEQGEILFADLVDEFSLMFESDNERFDANRFALACYKELEMAK
Ga0334991_0019759_3575_3730	F026557	AGGCGG	MINSVLTIPCEECNSTGLIFFGNDEDFDVETCVCDFGMEQDLNLFNTPEAN
Ga0334991_0019759_976_1152	F011487	AGG	MTFENDELYDEYYATTCPSCKENAVDSYEEKCTHCLLEEMSANYNEDIALEMSLGLDY