Scaffold Ga0334991_0000390

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0000390
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43050
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (82.42%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000868	Metagenome / Metatranscriptome	853	Y
F003422	Metagenome / Metatranscriptome	487	Y
F021109	Metagenome	220	Y
F021288	Metagenome / Metatranscriptome	219	Y
F030758	Metagenome / Metatranscriptome	184	Y
F043932	Metagenome / Metatranscriptome	155	Y
F060917	Metagenome / Metatranscriptome	132	Y
F063705	Metagenome / Metatranscriptome	129	Y
F068831	Metagenome / Metatranscriptome	124	N
F105175	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0000390_10321_10488	F000441	N/A	MKKKRRTKMKMSDKYLNDQLITAQKLLWGGSETENIEAHNIIAKLIKDKIEQVEL
Ga0334991_0000390_11033_11209	F063705	GAG	MKLHLISLNQDWEATKNGEPLKDDEYDPSDDYFQGAIEATEHLLSVATDIMNNNERVY
Ga0334991_0000390_11436_11594	F021288	AGGAG	MLGYTQKDLADMTYGVYQADLLINPDENPAIHNYLVTAHDFLQGLWAEGYFD
Ga0334991_0000390_11594_11824	F000868	AGGTGG	MSFLENENQMVIDATYSEIGEMLVEDWVNSNLDEGQMFADFRFAEMSDNNYLKGRFNLFYDLNPGDQYYLEYDEEK
Ga0334991_0000390_13807_14484	F003422	GGA	MSVGPGTILFMTNELVSSKYTFVCDPDECDSLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATITPTTTKEEQMETTVSPAVEYNPDLLVTYKIVSNYSDPEYATDKVRNIEWELHNSRTNSKIASVLTNKIASVKDIIVEAYSDSDDQETLRLIAEALEIELTREVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVDSQNGNIEIVDTEVCNVREN
Ga0334991_0000390_2_148	F105175	N/A	DGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK
Ga0334991_0000390_20932_21102	F021109	AGG	MNTLNRIKAEQDLARHIAHEKAMAKSPWIRESVQAFRNATPEQLAQVEAIRLKRGM
Ga0334991_0000390_31527_31904	F043932	AGGA	MAKKFKSLLNLLTLAEDPLSGSTGDVYFNVTSKNIKIYNGAVWVDLTPGTTDPAPFYMHTHSYDGNVHTVNLQETINFSEDINNNAGVLETNPAIIGLDGGTPTSSYANASYTELTLLDGGQIGN
Ga0334991_0000390_31894_32445	F068831	GGAGG	LATSYPTSKDNLTNPAATESMEGHADLHGNVNDAIEAIENKLGVDGSTDVNSIDYKVSQLQANLSTLDAENASELLGLDGNNDLTIDGIENKTTIDSFSKTVYKTVRYTLQTDKSVGNLTHTSTIVLLNDGTDVHISESDIVSNTDLSLATVTFEENSGIISLCVTPVSGSIKVRYFRTALKA
Ga0334991_0000390_34141_34506	F030758	GGA	MATVDKNFKVKNGLNVAGTATFGSNVVLGETPLRFDTVTNKLQLQINGAWVPIALNSEIPDTSQDISFMDIGLAIDYNGQPIYTVQANGVTPTGINKFIDGGSPSSTDNDVSMVFDSGAL
Ga0334991_0000390_4896_5165	F060917	AGGA	MIEWLARRIFSWTSLREYIVDEVHLYDHLDTIINDPEGMKIASSSWMEGDTWYGWNYDSNAKRYYFDDVGNKSLIGLWEDQWLSKADSN