Basic Information | |
---|---|
Taxon OID | 3300034012 Open in IMG/M |
Scaffold ID | Ga0334986_0104386 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1694 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007222 | Metagenome / Metatranscriptome | 355 | Y |
F105189 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0334986_0104386_1523_1693 | F105189 | AGTAGG | MAGIPKVKITFDADFDELKKGVKGAQNEVEGFSDRIGKFGKVAAAAFAAATVAAVAY |
Ga0334986_0104386_990_1523 | F007222 | GGAG | MASKKGVYSIEVEPAALKNLIQTLNLLDKETQNEIRDAALPLSKRLAGQLMMSAQGAPAPQTKLVASTITAKRDRLIRVDIGGPKKVGRKYGGEASKSGKGSKVRQNAAPAGALLWGTEYGGGRGTDSLGRAYTDRFKAPRNKRGYWIAPAVDYYTPIVAKEYIDLIQGVIKKVGLN |
⦗Top⦘ |