Scaffold Ga0334986_0085793

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0085793
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1913
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F013279	Metagenome / Metatranscriptome	272	Y
F066578	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0085793_1222_1473	F001477	AGGAGG	MSNIYTIHPRKSELILLYEVVDESGRAEWGGASAEQAIQWLTLAPAEARILVSAWDSDEEDAHLVGQTLDITEIIQQARKVGR
Ga0334986_0085793_209_382	F013279	GGA	MQYDYRCPDCNAVLTIERSIHEEPREPSCFDCHIPMVRKWDSPAITFKGKGFYSNGG
Ga0334986_0085793_3_122	F066578	N/A	DLPEPVWYVQYLPATTEFDRIEKVDKLVGYLPIEEAVQL
Ga0334986_0085793_745_1029	F003863	GGAGG	MESRQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIINPDSRLTVGIHTRANAVPEVAGRTDYDRADEGDNGGEA