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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034012 Open in IMG/M |
| Scaffold ID | Ga0334986_0015290 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5352 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (7.69%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004839 | Metagenome / Metatranscriptome | 421 | N |
| F010541 | Metagenome / Metatranscriptome | 302 | Y |
| F014956 | Metagenome / Metatranscriptome | 258 | Y |
| F031483 | Metagenome | 182 | N |
| F033801 | Metagenome | 176 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334986_0015290_1999_2133 | F033801 | N/A | MKYEIKWKSGRIITDAENVEDAIKKFKELGIEVEDKEISIASFG |
| Ga0334986_0015290_2269_2535 | F010541 | N/A | MEKQIYSVMYFGNAKRYQDLCEEVEAYSKRHAVEKVYEKMLNENYFPEDEFSWGGLIRDCDGNVIADANDETIEYDGGHFYAEPLITV |
| Ga0334986_0015290_259_516 | F014956 | N/A | MNIQEFVINVTTTVCPSHIVEPLHLKKWWRQRGVGELEKYFVSGNAIHYNEEIDWKKISDHKKSLWYDSQNFQINMGHEYSKRQG |
| Ga0334986_0015290_4044_4580 | F004839 | N/A | MEKNFTNTQFKWTFESISDNIPTIMLLTIVLTYGINAYLTAIFLPINFWVAITASTILQLGRFAVVFMDFLNPTKGRSPFPPKIALGATVIALIEVFFGLMEKYSGAEFITMFFFVGTIVCFGYLLEINFVNKGVEAYGLTEPKVIKRRKRRVVVKKVTEDAPKESKGYVTSFQTITL |
| Ga0334986_0015290_491_949 | F031483 | N/A | MNILKGRVKYTAGKVFEGQYGLSINAAITLENGTDIRVYGKPDDEKLKALQKDDIVTIIHDGKSYKVAFDMVTANDLPEKVQTTTEGNNVQQAANVTPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |