Scaffold Ga0334986

Basic Information
Taxon OID	3300034012 Open in IMG/M
Scaffold ID	Ga0334986_0003425 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034012 Open in IMG/M

Scaffold ID

Ga0334986_0003425 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12559
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12559

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047567	Metagenome / Metatranscriptome	149	N
F050981	Metagenome / Metatranscriptome	144	N
F083886	Metagenome / Metatranscriptome	112	N
F094923	Metagenome / Metatranscriptome	105	Y
F097184	Metagenome / Metatranscriptome	104	Y
F100656	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0003425_282_548	F100656	AGG	MPMTTLKNSLILLALCMLCACQTAPHKPLQASVAIATAQASTASASVAVRSAIDSSKSTTSEIKRIRTTQDRVDAKSVLILKWLELQR
Ga0334986_0003425_3520_3648	F094923	GGAG	MSHDPDLVARANRTMAAIRTMIRVILTTAILSLLWLIWRLCA
Ga0334986_0003425_545_1033	F050981	GGAG	MRWLAIIWLSASSVCAQISDDELSKISKAEIVLTVRHLRALTADAIASADRAIASEARVQASLTDATDALMHSQSQLMKVDQDIHSLQAQAQEQTRIAVGAKADALKAQRSADRRGNLLGWLGAGLLCIVCLKLTSILPPPYGFLLPVAAIPAGYWLARLFL
Ga0334986_0003425_59_307	F083886	N/A	MLRNEIFGDLWRGSLGMAGSWLAVISSMHEDIDEVAKTAGMILGCLASLAMFISLCQRIYHNWRTRKWEGVMFKDADDDLKK
Ga0334986_0003425_6625_6864	F047567	AGGAGG	MISLEKLHATKRDATAMLAEIVERIHETEWMRETVERVGLDPLEMYEVVKHGSKWRIKATQAHLDATQNLHKINNQRGV
Ga0334986_0003425_7252_7581	F097184	N/A	MSAICKVCAKVWAGPSLGRLYHCDSETIRKIDQTKAQPYKIEKIAIKVLGRTVCECGQPAVRPSSCDARSSVCQRCHDCEIGGYGSRLAKSSGVETYAVRLPSWGGTGQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334986_0003425

Overview

Ecosystem & Geography

Associated Families

Sequences