Scaffold Ga0334986_0002503

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0002503
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14948
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (82.35%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011484	Metagenome	290	Y
F014714	Metagenome / Metatranscriptome	260	N
F015702	Metagenome	252	Y
F017469	Metagenome / Metatranscriptome	240	Y
F026822	Metagenome	196	Y
F048091	Metagenome	148	Y
F061542	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0002503_10139_10315	F011484	AGGAG	MRELEQFLNTEAEWVLERLSTGTEVNDRNYYQGRLDQLAQVRRFLGQPQIMREREGAR
Ga0334986_0002503_4342_4524	F061542	AGGAGG	MICEVCRSGGELNKTGQFKRAITMHKKCKEDCGCQHQTGPGVGSLAMAMAEPMRTQYPLE
Ga0334986_0002503_6689_7081	F014714	AGGTGG	LGIELKEPELLDYLKEFYYSDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFDLSTIPQPKWEDKWLPITTEFANKTSRTKLVGFLKLEDGILF
Ga0334986_0002503_8927_9097	F026822	GAG	MAEPRYLSGDEYALNGVELDIVKCKECASEYDYAQYHSYTCSDCEDKMIARERERV
Ga0334986_0002503_9090_9263	F015702	AGGAG	MIKEIELEYTAHNLVKLSRDKWGDNATEYLAGALESVITYNQMKVLIDFLKAERTNG
Ga0334986_0002503_9260_9394	F017469	AGGAG	MKTICQFCGWEVSRPDWYNDYNGKLICDNCLMDSATEREKEKAI
Ga0334986_0002503_9391_9531	F006842	AGGAG	MKAIPAICGDHLVPISECDCLSYMREIASSAERLIQLAQEREELTK
Ga0334986_0002503_9646_9912	F048091	AGAAGG	MIEHHFIIKYSKEEGWSWDTDSEEPRYPDGTVWNDQTEEWQGGYVGWNEEKGEAEYLDDDDLIGEQLGAILKLANEANKEREGQENEL