Scaffold Ga0334986_0000421

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0000421
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36962
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (82.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012570	Metagenome	279	Y
F019960	Metagenome / Metatranscriptome	226	Y
F037206	Metagenome	168	Y
F095133	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0000421_29532_29684	F019960	N/A	MAVLLTFFIVMPVLAFMYYDMYVATQAAVAEVRKMKELRREILEERLYGK
Ga0334986_0000421_31922_32167	F037206	AGGGGG	VKCQNCGSKTHVVNTTQQPGGIRRQRKCDSCKSNAYSAEVWLKATANGAEPVYTKEEAALIKKKEVDVRRANEDRRKTDVT
Ga0334986_0000421_7216_7512	F095133	N/A	MRGFLMMTDTAAVVGARRSYPHYLERVEILLDDVMFRVWVDYEPADASVGVNATAWLVHAHVGDSPADIACYLKESTVNRLETEAADYLSGGGRHAFD
Ga0334986_0000421_7497_7763	F012570	GGAGG	MQTINIDGTTYKVKFDRDPIELAKLARKPYKPKKPKDIRKFPHRADLTTAEYVRQFDELNNLTRVKYDNLNFGNTAQYDSTIPLCEVF