Scaffold Ga0334986_0000145

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0000145
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58647
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (49.06%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F001120	Metagenome / Metatranscriptome	772	Y
F001190	Metagenome / Metatranscriptome	753	Y
F001806	Metagenome / Metatranscriptome	631	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002333	Metagenome	569	Y
F002721	Metagenome / Metatranscriptome	534	Y
F003601	Metagenome / Metatranscriptome	477	Y
F003889	Metagenome	463	Y
F015201	Metagenome / Metatranscriptome	256	Y
F022857	Metagenome	212	Y
F053230	Metagenome	141	Y
F067649	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0000145_12306_12491	F067649	N/A	MEIYISLGEWINTLQCRMSNAVDGDCFYLPSLMHLHAFYLVKDASFPDRNFKVELKEDSR
Ga0334986_0000145_22167_22364	F022857	GGA	MEPITVPKLTVSFAVDLEVDYDPFTGRTPDQVAAALQDELDNLLFESSPDVVGVYTSITAIVNND
Ga0334986_0000145_24694_25407	F001018	N/A	MTQVTQTKLKELNVLQLYEHYGALERSLPLLTPESQDMARAELEACAKLRSEKVDRIHYALASHEEALERIKKESELLGQAKRHHESQLRGLKSLLSWLRRSLPKDENKITGRNYQFVLVKKKDLTVEISSDHEYWTAEERQQFCIEQEVTTTKQTVVRSMDGSILEEKIEPKTKTEILPNSDALRNAYKTGQPLPHGVKVVQEYSVRTKRIVTGSDLDLDASQHFGELLSEAGTSD
Ga0334986_0000145_25410_25529	F053230	N/A	MFESLIGTLLPVLKDLLWTAAAALLAYTLNKIQSHFNTI
Ga0334986_0000145_26097_27041	F002333	N/A	MSTETLQELNAAQACIYTRTNLRRAFKDFDDSDISGIYLRDDSCLVVRRDGSEQTYNRPLIQHAFMDYSNRLKDFFAYLGPNYRGPSIWHHNAYIMFKGWHYSHALGHITANAQLQAHWADKFIHLSDPAKLTALLQSDQADLGHLVAPDGMRLPNRPVDLESNMEEEVAGVPPVALEPYCSCGSFQRQLLNVSEFQKEIQGFRPWCIHLTWFHKYRELLCKRTEARNASPSGVPDKCVAWWYAPPSDAHSDGRFVLLHTKSGAQAPLTHWRTYKPKEVFTQNDAWDLFFNMLEAGYVPFPGIALPQLQSVIKK
Ga0334986_0000145_34148_34264	F015201	GGAGG	MKPALIVYLVNTKKKLARKDVESKHAIRELKKQYAATF
Ga0334986_0000145_36827_37045	F003601	AGG	MTDYTDDQLLAMAMANIGEFIHDNSPHYVLVEEDPRNEEDYDTWEYGTEPLPQDHTWHSTSIDVEVSPGAPE
Ga0334986_0000145_39056_39316	F001807	N/A	MTVLAIEDTTINGSDVTVTAVVDDMRLLYKATHLDPEEWAPALCTASFELDEGEQIPTDEDGFCSYLDSLDLNWQLIDTSDWDLDS
Ga0334986_0000145_39510_39716	F001120	N/A	MSEPKSGFNFDRTIHGVNITEHGVKSYTKSIQLGPFQLTLNARKSGVLGSISIPGTGLSKRNIKLFDF
Ga0334986_0000145_44211_44435	F001806	AGG	MDAGTRQKRVEALEAIKNKAMKMAADGASSDDVRSFVSDAKINLAYELPDEEAFTKAARATLAYKRKKGEPTQE
Ga0334986_0000145_46871_47515	F002721	GAG	MAKDHRLDLGRYVTNPFNNQGQIRKNLDFDTLFRAKPDTGEYPWNPSRFTEGDLLKRMMTRKRNLNPSLNFVSNSPFFDDNAEVNPQYELFEGLGRFNRPVDYDFNEGRAVTPQRPQDQPDFNPVWVEAYRLSPTVKPDKAAKNPMPRMKNPDPNGYLMAVAENRVDNEMEGKMSIAQLLDRKGVMKPMEVKKEEKVGEEEAATEAQQPPSPQK
Ga0334986_0000145_52528_52695	F001190	N/A	MTVAGNTQDDYFDITKFEQLLNRLESSKQRQQRQKSVEGRRDIFTTGLAGMMSNF
Ga0334986_0000145_55914_56252	F003889	AGG	LISNSRIERKQIEKIVGPEYIALALTAIASAVSGGTWVANKILNRQTQDIQQAFNYTNSQKRRIDLLEDQINRMPLDYVLKVDFLREIKEMHDNFREINNKLDKLMEKLLTK