Scaffold Ga0334919_000083

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334919_000083

Scaffold Ga0334919_000083

Overview

Basic Information
Taxon OID	3300034001 Open in IMG/M
Scaffold ID	Ga0334919_000083 Open in IMG/M
Source Dataset Name	Biocrust microbial communities from Mojave Desert, California, United States - 15HMC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	74462
Total Scaffold Genes	69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (59.42%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.7856	Long. (^o)	-115.66	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F094364	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334919_000083_17849_18079	F094364	GGA	MSLKVLGMFERWNKEALDLHELFEAGGNDPEERKAVFFTVERLVEQGLLEERGNDFYALTAEGKRVALENIGSEED

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