Scaffold Ga0334979_0010173

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0010173
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6489
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018135	Metagenome	236	Y
F040479	Metagenome	161	Y
F086805	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0010173_2322_2465	F086805	AGGAGG	VRELSKRGNLVAGIAIGLLIAGLVWISGNVWITEEGRICLGSMLKCM
Ga0334979_0010173_2556_2714	F018135	AGG	MTIERVAHSGAYVLSDFVGEGAGEYLFTRTYYGYTLAQAKAQFKIALAEEGK
Ga0334979_0010173_5551_5748	F040479	AGG	LLAQETLRANQEAQLLELLNSLESVVDNLNYKSFTAYDTLVIAMEGVRVALSDTQIDEAGTDPLQ