Scaffold Ga0334979_0008964

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0008964
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6937
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025009	Metagenome	203	Y
F030983	Metagenome	183	Y
F037222	Metagenome	168	Y
F047492	Metagenome	149	Y
F056421	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0008964_1862_2074	F037222	GAGG	MDTTTPPPTSQLRLDWLETLTQTYAELALAGGDQALKDGRRNYLIARFKELEQDFPGITAIIHTKIRAMK
Ga0334979_0008964_2071_2319	F047492	AGG	MNIFEQGKTLFTQNEFNQALAEAKAEIMSVAVYTTKQAMYLERRACAQMLLDMADNEDEGTVCTALRNAADQLVNRVPVQNQ
Ga0334979_0008964_2735_2938	F025009	AGGA	MTPMKVKWYEGRKGKIGIAKVQTEDGDTEYRIGTVDGFLEHMDVQQVVAWGVWFPIEAGDALFLEGV
Ga0334979_0008964_6080_6274	F030983	AGGA	MTNEIETIIKTEDNVRVSIDSWDNGGAWLHLSMRHGTASAVLTRSEAEQLLAGLQLILAQEVTA
Ga0334979_0008964_6734_6853	F056421	AGGAG	MKDDDVEDLFAYGWLDTALAIVLALVALVALSFFAGYLI