Scaffold Ga0334979

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0006466 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033996 Open in IMG/M

Scaffold ID

Ga0334979_0006466 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8198
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (66.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8198

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (66.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002245	Metagenome / Metatranscriptome	578	Y
F002935	Metagenome	519	Y
F011299	Metagenome / Metatranscriptome	292	Y
F020168	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0006466_1395_1544	F020168	GAG	MIDIIGSVIAIILIAFLCSPIVLAVYMWNGAKIDNDGDGKEDLPNRWDK
Ga0334979_0006466_1737_1961	F002245	AGG	MSNLMTVPHTVTFEASIDLDKIPANLLPALLKLNETDLLTMCKEATLHALTESNLLKIANENNTWAEVTIKEGN
Ga0334979_0006466_3_179	F011299	N/A	DYVATAEILKYASDKMHPALFSKIVNDFAQMFAVDNERFDVKRFHEASGYHVPNFTSR
Ga0334979_0006466_4888_5301	F002935	N/A	MKGYSGNVLDGKKLAKIANDIYRVQYSNDFSECTVDNLLLIELEEKNVFGDPKYAVLCSEGVGWEQDTYGCIEIPTNIGQMGLWNGRVFISVDTVKSCQTIFKEDVSDYIRTFGSRLDSNCSLWQSKMSVTPATILA
Ga0334979_0006466_6502_6870	F001125	GGCGG	MGDRANFGFKDSKDNIVFLYGHWAGHRMLENLADAVSAAEPRWQDESYATRIAISQLIKDEWASETGWGITVNELADNEHKVPIIDWKNQTFTLMEEDLKTVVFSTTLDAFVAKYSSQPSMV
Ga0334979_0006466_7977_8198	F000868	AGGTGG	MSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQLFADYRFAEMCESNYLKGRFNQFYDLKPEDQYYIEWDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334979_0006466

Overview

Ecosystem & Geography

Associated Families

Sequences