Scaffold Ga0334979_0005304

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0005304
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9051
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005529	Metagenome / Metatranscriptome	397	Y
F030017	Metagenome	186	Y
F034898	Metagenome / Metatranscriptome	173	Y
F044503	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0005304_1580_1945	F034898	N/A	MTREEIIIELNHRATQKYLVYLALQEIMLDYYEDITMLKAFDGDLKTKHKNMINALKRKSTEAFRFLENYDGGEATIKQFHEFVTLFEKLHHSIDKGGSLFHDCLNAIELILNNNETQKP
Ga0334979_0005304_1923_2072	F044503	N/A	MRHRNLTEYEKQLIFEKWQDRTPTKVIALEMGVSYMCIYYQLKKRNLVG
Ga0334979_0005304_355_687	F030017	N/A	MEFDEITQQIKSLYLEGLTRKKIAKTLGLDVQKVGYLLYTKMKMHEIYPRKLMDENIFQILTDHQISRILTLATYGYCCREIAEDQNLEFRKVKKLLDVAEAKNMIQKKV
Ga0334979_0005304_5472_5720	F005529	N/A	MPRIQPTKTDYSLEIRYRLRDGQWSPWSNKGKGKFETIELVQRQIRTLAAAYQLREKEVRFEWNGVLCDFAGNKTGEVITLK