Scaffold Ga0334979_0004330

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0004330
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10087
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F001834	Metagenome / Metatranscriptome	628	Y
F002357	Metagenome / Metatranscriptome	567	Y
F037698	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0004330_124_243	F037698	AGGAG	MCANHDEMTHQINWAYQNELRKQWLLNNPDAQYIGWMSI
Ga0334979_0004330_4931_6178	F000468	GGA	MTIWTPDWKLTVAGVDYTNIAISDIAHEAGRTNIYTQPNPSYLQISLIALSGQTLPFDINDSLSLQVKNSSGTYVTLFGGNVTDLTVAVERTGALATVVNYTILAMGTLVKLAKEIYNDNISQDEDGNQIYDLLSSVLLATWNDVPAASTWATYDATETWATAGNQGLGEIDQPGLYTMSSRSADPDTIYNIASLIADSAFGYLYEAPNGNIGYADADHRQTYLLANGYVDLDGRHALGQGLSTITKSGDIRNDIYINYGNNFNSQATASSAQSIALYGYKAQTIQSSIHAAIDAQAVADRYIAQRAFPLPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNIQNLPDQISGGEFEGYVEGWRWSTRFNELFLTINLSPVAFSQVAMRWNTVPITEAWNTIDPTLTWEYATIVA
Ga0334979_0004330_794_1459	F002357	AGGAG	MAFNLEDYEDVATLNKWFIANYPMGRSDISVISHDPEKGYILVQATLWRDAADPAPAVSNIAFGSRETYMANMKKWYVEDTASSSLGRAIIILKGSNKTATKDSMETVKADQSFKEKLESRQNMYGKPGSKSAQIETILRDSFAADKKDPEPVAWSVGDVVAEIGASIPNEPPACQHGHTLKEGISKGGKPYRGYVCKAKECPPKWAKLTANGKWYFEGGE
Ga0334979_0004330_8904_9293	F001834	N/A	MPNQTILEQVRTPLATALSSVAGNVYSFVPETVIPPAVVCVPDSPYLEFETISKSNIRAKVNMTITVAVAYNSNPASLDNIEQLVISVLAVIPAGYIVSSVERPTVTQVGAATLLIADVRVSTYYTRTI