Scaffold Ga0334979_0002056

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0002056
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14715
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (96.97%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019438	Metagenome	229	Y
F021243	Metagenome	219	Y
F093280	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0002056_10928_11053	F019438	AGG	MMETILATILLGGIGFIVCGLVFIGLMHLWFWMDENERGDR
Ga0334979_0002056_11262_11450	F093280	GGGGG	MKKETEALIKATGCADVGELFDRSIRLGQVLHQFKQEHGRIMDATELRYLEAVLHAKPQERS
Ga0334979_0002056_11447_11752	F021243	AGGAG	MKDPEDEAFEQLALKQGQWEHTSGWRKRQIERDFAAIDDANNIRKKQIAHMDMHSHPAEFVHLHRNDTIEEVAKELETKFTGPFGRDTVQSFATFVRSMKK